VCS Methods |
Corresponding author: Jürgen Dengler ( dr.juergen.dengler@gmail.com ) Academic editor: Wolfgang Willner
© 2023 Jürgen Dengler, Florian Jansen, Olha Chusova, Elisabeth Hüllbusch, Michael P. Nobis, Koenraad Van Meerbeek, Irena Axmanová, Hans Henrik Bruun, Milan Chytrý, Riccardo Guarino, Gerhard Karrer, Karlien Moeys, Thomas Raus, Manuel J. Steinbauer, Lubomir Tichý, Torbjörn Tyler, Ketevan Batsatsashvili, Claudia Bita-Nicolae, Yakiv Didukh, Martin Diekmann, Thorsten Englisch, Eduardo Fernández-Pascual, Dieter Frank, Ulrich Graf, Michal Hájek, Sven D. Jelaska, Borja Jiménez-Alfaro, Philippe Julve, George Nakhutsrishvili, Wim A. Ozinga, Eszter-Karolina Ruprecht, Urban Šilc, Jean-Paul Theurillat, François Gillet.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Dengler J, Jansen F, Chusova O, Hüllbusch E, Nobis MP, Van Meerbeek K, Axmanová I, Bruun HH, Chytrý M, Guarino R, Karrer G, Moeys K, Raus T, Steinbauer MJ, Tichý L, Tyler T, Batsatsashvili K, Bita-Nicolae C, Didukh Y, Diekmann M, Englisch T, Fernández-Pascual E, Frank D, Graf U, Hájek M, Jelaska SD, Jiménez-Alfaro B, Julve P, Nakhutsrishvili G, Ozinga WA, Ruprecht E-K, Šilc U, Theurillat J-P, Gillet F (2023) Ecological Indicator Values for Europe (EIVE) 1.0. Vegetation Classification and Survey 4: 7-29. https://doi.org/10.3897/VCS.98324
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Aims: To develop a consistent ecological indicator value system for Europe for five of the main plant niche dimensions: soil moisture (M), soil nitrogen (N), soil reaction (R), light (L) and temperature (T). Study area: Europe (and closely adjacent regions). Methods: We identified 31 indicator value systems for vascular plants in Europe that contained assessments on at least one of the five aforementioned niche dimensions. We rescaled the indicator values of each dimension to a continuous scale, in which 0 represents the minimum and 10 the maximum value present in Europe. Taxon names were harmonised to the Euro+Med Plantbase. For each of the five dimensions, we calculated European values for niche position and niche width by combining the values from the individual EIV systems. Using T values as an example, we externally validated our European indicator values against the median of bioclimatic conditions for global occurrence data of the taxa. Results: In total, we derived European indicator values of niche position and niche width for 14,835 taxa (14,714 for M, 13,748 for N, 14,254 for R, 14,054 for L, 14,496 for T). Relating the obtained values for temperature niche position to the bioclimatic data of species yielded a higher correlation than any of the original EIV systems (r = 0.859). The database: The newly developed Ecological Indicator Values for Europe (EIVE) 1.0, together with all source systems, is available in a flexible, harmonised open access database. Conclusions: EIVE is the most comprehensive ecological indicator value system for European vascular plants to date. The uniform interval scales for niche position and niche width provide new possibilities for ecological and macroecological analyses of vegetation patterns. The developed workflow and documentation will facilitate the future release of updated and expanded versions of EIVE, which may for example include the addition of further taxonomic groups, additional niche dimensions, external validation or regionalisation.
Abbreviations: EIV = Ecological indicator value; EIVE = Ecological Indicator Values for Europe; EVA = European Vegetation Archive; GBIF = Global Biodiversity Information Facility; i = index for taxa; j = index for EIV systems; L = ecological indicator for light; M = ecological indicator for moisture; N = ecological indicator for nitrogen availability; R = ecological indicator for reaction; T = ecological indicator for temperature.
bioindication, ecological indicator value, Ellenberg indicator value, Europe, light, moisture, niche position, niche width, nitrogen, pH, temperature, vascular plant
Since the probability of species’ occurrence changes predictably along environmental gradients, plant community composition holds valuable information about local environmental conditions. This basic notion, conceptualised as bioindication, has been a subject of research for a long time (see review by
The idea of using the presence of plants to assess site conditions by qualitatively matching the most probable occurrence of plant species with environmental conditions was introduced to vegetation ecology by
Overview of the 31 ecological indicator value systems (EIVs) used to derive the Ecological Indicator Values for Europe (EIVE) 1.0. Further details are provided in Suppl. material
EIVE name | Country or region | Reference(s) | # of vascular plant taxa | Habitat subset of species | M min | M max | M amplitude coding | N min | N max | N amplitude coding | R min | R max | R amplitude coding | L min | L max | L amplitude coding | T min | T max | T amplitude coding |
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Alps | Switzerland + entire Alps | Graf (unpubl.), updated and augmented from |
6470 | All | 1 | 5 | I, II, x | 1 | 5 | I, II, x | 1 | 5 | I, II, x | 1 | 5 | I, II, x | 1 | 5 | I, II, x |
Austria | Austria | Englisch and Karrer (unpubl.), updated and augmented from |
3253 | All | 1 | 12 | I, x | 1 | 9 | I, x | 1 | 9 | I, x | 1 | 9 | I, II, x | 1 | 9 | I, x |
Austria_Pannonian | Austria: wider surroundings of Vienna |
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954 | All | 1 | 6 | range* | 1 | 3 | range* | 1 | 5 | range* | 1 | 3 | range* | 1 | 3 | range* |
British_Isles | United Kingdom + Ireland |
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1867 | All | 1 | 11 | NA | 1 | 9 | NA | 1 | 9 | NA | 1 | 9 | NA | NA | NA | NA |
Czech_Republic | Czech Republic |
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2972 | All | 1 | 11 | I, II | 1 | 9 | I, II | 1 | 9 | I, II | 1 | 9 | I, II | 1 | 9 | I, II |
Czechoslovakia_Ambros | Czech Republic + Slovakia |
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587 | Forests | 1 | 5 | NA | NA | NA | NA | 1 | 5 | NA | 1 | 5 | NA | 1 | 5 | NA |
Czechoslovakia_Jurko | Czech Republic + Slovakia |
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2445 | All | 1 | 6 | range** | 1 | 5 | range** | 1 | 5 | range** | NA | NA | NA | NA | NA | NA |
Germany | Germany + adjacent regions |
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3405 | All | 1 | 11 | I, II, x | 1 | 9 | I, II, x | 1 | 9 | I, II, x | 1 | 9 | I, II | 1 | 9 | I, II |
Germany_Dierschke | Germany + adjacent regions |
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399 | Grasslands | 1 | 11 | I, x | 1 | 9 | I, x | 1 | 9 | I, x | NA | NA | NA | NA | NA | NA |
Germany_GDR | Germany: former GDR |
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1719 | All | 1 | 11 | NA | 1 | 9 | NA | 1 | 9 | NA | 1 | 9 | NA | 1 | 9 | NA |
Spain_Asturias | Spain: Asturias |
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1842 | All | 1 | 5 | I, x | 1 | 5 | I, x | 1 | 5 | I, x | 1 | 5 | NA | 1 | 5 | I, x |
Spain_Cantabria | Spain: Cantabrian Mountains |
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1888 | All | 1 | 11 | NA | 1 | 9 | NA | 1 | 9 | NA | 1 | 9 | NA | 1 | 9 | NA |
European_Mires | Europe |
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1771 | Mires | 1 | 11 | range | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
Faroer | Faroe Islands |
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126 | All | 1 | 11 | I, x | 1 | 9 | I, x | 1 | 9 | I, x | NA | NA | NA | NA | NA | NA |
France | France: European part |
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6166 | All | 1 | 11 | NA | 1 | 9 | NA | 1 | 9 | NA | 1 | 9 | NA | 1 | 9 | NA |
Georgia | Georgia: Kazbegi district | Nakhutsrishvili and Batastsahvili (unpubl.), updated and augmented from |
1116 | All | 1 | 6 | I, x | 1 | 5 | NA | 1 | 5 | NA | 1 | 5 | NA | 1 | 5 | NA |
Greece | Greece: South Aegean region |
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2400 | All | 1 | 11 | I, II, x | 1 | 9 | I, x | 1 | 9 | #, I, x | 1 | 9 | I, x | 1 | 9 | #, I, II |
Hungary_Borhidi | Hungary |
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2088 | All | 1 | 11 | NA | 1 | 9 | NA | 1 | 9 | NA | 1 | 9 | NA | 0 | 8 | NA |
Hungary_Soo | Hungary |
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2159 | All | 1 | 5 | I, x | 1 | 5 | I, x | 1 | 5 | I, x | NA | NA | NA | 1 | 5 | I, x |
Hungary_Zolyomi | Hungary |
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1243 | All | 0 | 11 | NA | NA | NA | NA | 1 | 5 | I, x | NA | NA | NA | 1 | 7 | I, x |
Italy | Italy | Guarino (unpubl.), updated from |
5585 | All | 1 | 11 | NA | 1 | 9 | NA | 1 | 9 | NA | 1 | 9 | NA | 1 | 12 | NA |
Netherlands | Netherlands |
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1570 | All | 1 | 11 | NA | 1 | 9 | NA | 1 | 9 | NA | 1 | 9 | NA | 1 | 9 | NA |
Poland | Poland |
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2209 | All | 1 | 6 | range** | 1 | 5 | range | 1 | 5 | range** | 1 | 5 | range** | 1 | 5 | range** |
Romania | Romania |
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3620 | All | 1 | 6 | NA | NA | NA | NA | 1 | 5 | NA | NA | NA | NA | 1 | 5 | NA |
Serbia | Serbia |
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2215 | All | 1 | 6 | NA | 1 | 5 | NA | 1 | 5 | NA | 1 | 5 | NA | 1 | 5 | NA |
Sweden | Sweden |
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2422 | All | 1 | 12 | NA | 1 | 9 | NA | 1 | 8 | NA | 1 | 7 | NA | 18 | 1 | NA |
Sweden_Diekmann | Sweden: hemiboreal zone |
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34 | Forests | 1 | 11 | I, x | NA | NA | NA | 1 | 9 | I, x | 1 | 9 | I, x | NA | NA | NA |
Slovenia | Slovenia |
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683 | Forests | 1 | 11 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
Ukraine | Ukraine | Didukh (unpubl.), updated from |
3326 | All | 1 | 23 | range | 1 | 11 | range | 1 | 15 | range | 1 | 9 | range | 1 | 17 | range |
USSR_Ramensky | Former USSR |
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1359 | All | 1 | 120 | range | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
USSR_Tsyganov | Former USSR: hemiboreal zone |
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2122 | All | 1 | 23 | range | 1 | 11 | range | 1 | 13 | range | 1 | 9 | range | 1 | 17 | range |
Indicator values are widely applied in vegetation science and global change studies. They are suitable to indirectly assess environmental conditions and the drivers of observed vegetation differences in time or space (see review by
However, the bioindication approach as such, and the wide use of EIVs, have also been criticised. One line of criticism holds that indicator values have been assigned to plant species mainly based on expert judgement, rather than on accurate measurements (
Recent trends in ecoinformatics opened opportunities for continental-scale studies of plant community data in Europe. Important developments were the emergence of large-scale vegetation-plot databases like the European Vegetation Archive (EVA;
Here, we aim to fill this gap by developing the Ecological Indicator Values for Europe (EIVE), a pan-European ecological indicator value system for the five niche dimensions most often included in the existing EIV systems and most frequently used in ecological analyses. These are the three main substrate variables moisture (M), nitrogen (N) and reaction (R), as well as light (L) and temperature (T). We achieved this by numerically combining all available systems that contained these indicators into a “consensus system”. In doing so, we also implemented several novelties that should facilitate the future application of EIVE: (i) all indicators were scaled from 0 to 10 on a continuous interval scale and (ii) for each indicator we provide one value for niche position and one for niche width. In this paper, we describe the development of EIVE and release version 1.0 as an open access database to initiate a community-based approach for future updates and extensions.
Our study covers Europe as a whole in the geographic sense, i.e. from the Atlantic Ocean to the Ural and Caucasus Mountains. We also included Georgia, whose placement in either Europe or Asia is disputed, and kept the few species of the Asian part of the former Soviet Union that were included in
Map of Europe showing the areas covered by ecological indicator value (EIV) systems that were used to derive the Ecological Indicator Values for Europe (EIVE) 1.0. Colours indicate the number of EIV systems covering the complete vascular plant flora. Hatched and dotted areas refer to EIV systems that cover only a subset of specific habitats. Please note that for several EIV systems we could only approximate the geographic scope, as they did not provide a map or precise verbal description. Two EIV systems refer to very small areas that are hardly visible on the European map: the Faroe Islands and the Kazbegi region of Georgia.
We collected all indicator value systems known to us that contain assessments of plants regarding their niche position (and potentially also niche width) along ecological gradients on numerical scales. Of those, we used the 31 EIV systems that included indicator values of vascular plants for at least one of the five most frequent indicators, namely moisture (M), reaction (R), nitrogen (N), temperature (T) and light (L) (Table
If several editions of the same EIV system existed (e.g.
We first split the original taxon names as they appeared in the 31 EIV systems into genus name, species epithet, infraspecific epithets, rank-indicating abbreviations (such as subsp., var., aggr.) and taxonomic authorities. Genus names and species epithets were searched for typos and rank-indicating abbreviations standardised to “sect.”, “subg.”, “aggr.”, “subsp.”, “nothosubsp.”, “var.” and “×”. Additions like “sensu lato” and “sensu stricto” were retained at this step, but harmonised in spelling to “s. l.” and “s. str.” to support name interpretation in the following steps. Taxonomic authorities were disregarded, as there is a huge variety of spelling variants and they rarely aid in the discrimination of false vs. correct interpretations. This first step resulted in the assignment of a (preliminary) harmonised original taxon name.
In a second step, we retrieved the database underlying the Euro+Med Plantbase with accepted taxon names and all synonymy and parent-child relationships on 2022-03-21 (
Third, the numerous “unresolved” names were all checked by experts to pinpoint reasons for mismatching and treated according to one of the following rules: (a) if the spelling harmonisation of step (1) had failed for some reason, the R code was adjusted; (b) if the reason for the non-match was a typo, such as “vemalis” instead of “vernalis”, an epithet erroneously starting with a capital letter or a name field containing also the synonym (“Alchemilla baltica=nebulosa”), the adjustments were made in the harmonised original taxon name; (c) if we, however, came to the conclusion that there was no spelling error, but the name was missing in
Our additions fall into four categories and are comprehensively documented with explicit definition of content, taxonomic authorities and the source of the definition where applicable (Suppl. material
When making additions, we strived for consistency with
Further, we identified cases in which the same taxon name has been applied to different taxa by different EIV systems. Often the same correctly applied name might refer to a concept of different width (subspecies vs. species, species vs. aggregate, aggregate vs. aggregate s.l.; see
We ran the whole automated workflow repeatedly over all combinations of original name and EIV system until only a small number of unresolved taxa remained and there were no evident mis-assignments.
The 31 selected EIV systems were checked for entries that were not in accordance with their defined categories of the respective indicators and corrected if needed. Additional symbols, such as “~” for indication of fluctuating water table in the case of M, were removed. We merged indicator values for moisture if they were defined by different growth forms under identical habitat conditions, such as M = 11 and M = 12 in
For those systems that characterised the niche with minimum and maximum instead of a single number for niche position, we took the arithmetic mean of these two values as the metric of niche position. In four EIV systems, certain taxa had multiple assessments of their relevant indicators (Suppl. material
Next, we scaled the raw indicator values of each EIV system (EIVori) linearly to a range of 0 to 10, with the idea that 0 should represent the lowest possible and 10 the highest possible value of the respective environmental variable in Europe (Figure
with
EIVorii,j = original indicator value of taxon i in the respective EIV system j
EIVinii,j = indicator value scaled to a European range of 0 to 10
EIVori.minj = lowest number that is defined in the respective EIV system
EIVori.maxj = highest number that is defined in the respective EIV system
EIVini.minj = lowest number scaled to the European range of 0 to 10
EIVini.maxj = highest number scaled to the European range of 0 to 10
If an EIV system after our taxonomic harmonisation contained several taxa that correspond to the same taxon of “Euro+Med augmented”, we assigned the arithmetic mean of the indicator values to the latter. In cases of nested taxa (subspecies in species, species in aggregates) we derived EIV values for the superior level by averaging the EIV values of the member taxa of the next-lower level. This was only done if the taxon at the higher level did not have an EIV value assigned in the source.
To derive European values of niche position, we applied three different approaches to combine the scaled EIVs of all systems in which the respective taxon was included: (i) median; (ii) mean and (iii) weighted mean. With our “niche position” we aim to approximate the position on an ecological gradient which roughly separates equal halves of species occurrences. Therefore, niche position differs from realised niche optimum or mode (the environmental conditions under which a species is most frequent and/or reaches the highest cover values), particularly in the case of skewed or bimodal distributions. In the following, we describe the “mean” variant, while the analogous calculations for “median” and “weighted mean” are explained in Suppl. material
The initial indicator value of a taxon i of the European consensus system (EIVEini) was derived as follows from the scaled values in the individual EIV systems (EIVini) (Figure
EIVEini.mi = meanj(EIVinii,j)
Using linear regression and correlation coefficients, we evaluated the results of EIVEini against all expert-scaled EIV systems (EIVini) for each of the five indicators (Suppl. material
EIVadj.mi,j = ajmj + bjmj ∙ EIVinii,j
This numerical procedure standardised all regression lines for EIVEini vs. EIVadj to lie exactly on the 1:1 line. Subsequently, we created a new consensus system EIVEadj from the EIVadj values (Figure
EIVEadj.mi = meanj(EIVadji,j)
The resulting fit between EIVEadj and EIVadj was on average better (i.e. the slope was closer to 1) than between EIVEini and EIVini (Suppl. material
The exact same rescaling was applied to EIVadj to get EIVres (Figure
Methodological workflow of deriving EIVE as a consensus system of the 31 EIV input systems. Orange and blue boxes refer to niche position and amplitude/niche width metrics, respectively. White letters refer to input and intermediate metrics, black letters describe the definitive metrics of EIVE 1.0. Numbers denote the steps which are described in more detail in the text.
To establish a European indicator of niche width for each taxon in each of the five niche dimensions, we developed a separate workflow for the heterogeneous information in the various EIV systems. While some provided only a niche position, others provided niche width information as a range (minimum and maximum values) or as amplitude classes with two to four levels. If a source EIV system contained categorical niche amplitude information, we harmonised the coding. In Suppl. material
For the further calculations, we chose the final outcomes of the EIVE niche position calculation, i.e. the rescaled values (EIVEres) of the best variant according to the external validation (see below). In EIV systems j with range-based niche width coding, we derived the amplitude of taxon i (EIV.ai,j) as follows (Figure
If, for a certain taxon in a range-based system, minimum and maximum were the same (EIVori.maxi,j = EIVori.mini,j), we assigned to EIV.ai,j half of the minimum non-zero amplitude that occurred for other taxa in this system to account for the fact that a niche width of zero does not exist. In case of EIV systems with categorical niche width coding, we assumed standard widths w for each of the four categories on the scale of 0 to 10, namely # → 1.25, I → 2.5, II → 5 and x → 7.5 (Figure
To derive European indicators for niche width (Figure
The nw3 indicator was calculated as the sum of the average amplitude of taxon i across EIV systems (intraregional variation) and twice the population standard deviation (σ) of the niche position (interregional variation), bounded to a maximum of 10:
Combining interregional (based on niche position, red) and intraregional (based on niche amplitude, blue) information to derive a composite pan-European indicator of niche width (EIVE.nw, green), with three variants (grey). EIVres = regional ecological indicator value, rescaled, EIVEres = Ecological Indicator Value of Europe, rescaled.
For one selected niche dimension, the temperature indicator, we validated our three consensus approaches for niche position calculation (median, mean and weighted mean) by comparing their results for species with the bioclimatic characteristics of these species globally. The T indicator was chosen since the temperature niche is relatively easy to calculate from readily available independent data. For this purpose, we correlated the T values of species (not considering other taxonomic ranks) with the temperature characteristics derived from their geographic distributions. These were retrieved from the Global Biodiversity Information Facility portal (GBIF 2022; Suppl. material
After taxonomic harmonisation, the 31 source EIV systems contained between 34 (Sweden_Diekmann) and 6,470 (Alps) vascular plant taxa with at least one of the five niche dimensions assessed. The combined data comprised 77,795 rows of taxon name × EIV system combinations, corresponding to 14,835 accepted taxa: 22 sections, 60 aggregates s.l., 664 aggregates, 11,148 species, 2,899 subspecies and 42 varieties. Of these, 13,017 were from
The iterative workflow to derive EIVE 1.0 clearly improved the congruence of the EIVE scaling to that of the individual EIV systems, as can be seen in an increase of the mean slope of the linear regressions from EIVEini vs. EIVini to EIVEres vs. EIVres (Suppl. material
Accepted taxa, number of assessments (i.e. accepted taxa x EIV systems in which they were assessed) and mean number of assessments on which the consensus values in EIVE 1.0 was based.
Indicator | Accepted taxa | Assessments | Assessments / accepted taxa |
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M – Moisture | 14,714 | 74,640 | 5.1 |
N – Nitrogen | 13,748 | 60,120 | 4.4 |
R – Reaction | 14,254 | 65,281 | 4.6 |
L – Light | 14,054 | 59,547 | 4.2 |
T – Temperature | 14,496 | 63,889 | 4.4 |
The Pearson correlation between EIVE-T values and median bio10 values was highest for the calculation variant “mean” (r = 0.859; see Figure
Scatter plot of the temperature indicator T of EIVE 1.0 (mean approach) and median values of the CHELSA bioclimatic variable bio10 (mean daily mean air temperatures of the warmest quarter) at GBIF coordinates of the species. The black line was fitted for all species by least squares linear regression. Species occurring in at least four EIV systems are displayed in blue and the fitted regression line for this species subset is shown in red. Species which were covered by less than four EIV systems are in grey.
Highest Pearson correlations between indicator values for temperature and the median values of 19 CHELSA bioclimatic variables extracted at species occurrences (GBIF), comparing the source EIV systems with T values and the Ellenberg-type indicator values by
EIV system | Species | EIV based bioclimate selection | EIVE based bioclimate selection | ||||||
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best | EIV cor. | EIVE cor. | difference | best | EIV cor. | EIVE cor. | difference | ||
Alps | 4253 | BIO10 | 0.8611 | 0.8969 | +0.0358 | BIO10 | 0.8611 | 0.8969 | +0.0358 |
Austria | 2291 | BIO10 | 0.8649 | 0.9152 | +0.0503 | BIO10 | 0.8649 | 0.9152 | +0.0503 |
Austria_Pannonian | 835 | BIO5 | 0.5945 | 0.7864 | +0.1919 | BIO10 | 0.5933 | 0.7975 | +0.2042 |
Czech_Republic | 2024 | BIO10 | 0.7859 | 0.8469 | +0.0610 | BIO10 | 0.7859 | 0.8469 | +0.0610 |
Czechoslovakia_Ambros | 364 | BIO10 | 0.7157 | 0.8798 | +0.1641 | BIO10 | 0.7157 | 0.8798 | +0.1641 |
France | 3171 | BIO1 | 0.8028 | 0.8756 | +0.0728 | BIO1 | 0.8028 | 0.8756 | +0.0728 |
Georgia | 897 | BIO1 | 0.3603 | 0.6994 | +0.3391 | BIO1 | 0.3603 | 0.6994 | +0.3391 |
Germany | 2561 | BIO10 | 0.8473 | 0.9014 | +0.0541 | BIO10 | 0.8473 | 0.9014 | +0.0541 |
Germany_GDR | 1089 | BIO10 | 0.6982 | 0.8084 | +0.1102 | BIO10 | 0.6982 | 0.8084 | +0.1102 |
Greece | 1906 | BIO8 | 0.5801 | 0.3972 | -0.1829 | BIO1 | 0.5067 | 0.8249 | +0.3182 |
Hungary_Borhidi | 1844 | BIO10 | 0.704 | 0.7914 | +0.0874 | BIO10 | 0.704 | 0.7914 | +0.0874 |
Hungary_Soo | 1825 | BIO10 | 0.5936 | 0.7991 | +0.2055 | BIO10 | 0.5936 | 0.7991 | +0.2055 |
Hungary_Zolyomi | 1038 | BIO10 | 0.6176 | 0.8139 | +0.1963 | BIO10 | 0.6176 | 0.8139 | +0.1963 |
Italy | 4718 | BIO1 | 0.8304 | 0.8916 | +0.0612 | BIO1 | 0.8304 | 0.8916 | +0.0612 |
Netherlands | 1128 | BIO10 | 0.5837 | 0.7583 | +0.1746 | BIO1 | 0.5457 | 0.7619 | +0.2162 |
Poland | 1874 | BIO10 | 0.7943 | 0.9042 | +0.1099 | BIO10 | 0.7943 | 0.9042 | +0.1099 |
Romania | 2856 | BIO10 | 0.7225 | 0.8610 | +0.1385 | BIO10 | 0.7225 | 0.8610 | +0.1385 |
Serbia | 1947 | BIO10 | 0.7114 | 0.8622 | +0.1508 | BIO10 | 0.7114 | 0.8622 | +0.1508 |
Spain_Asturias | 1596 | BIO10 | 0.7091 | 0.8634 | +0.1543 | BIO1 | 0.7013 | 0.8700 | +0.1687 |
Spain_Cantabria | 1641 | BIO1 | 0.5599 | 0.8623 | +0.3024 | BIO1 | 0.5599 | 0.8623 | +0.3024 |
Sweden | 2035 | BIO1 | 0.8789 | 0.8811 | +0.0022 | BIO1 | 0.8789 | 0.8811 | +0.0022 |
Ukraine | 2520 | BIO1 | 0.7731 | 0.8231 | +0.0500 | BIO10 | 0.7528 | 0.8506 | +0.0978 |
USSR_Tsyganov | 1815 | BIO1 | 0.7187 | 0.7665 | +0.0478 | BIO10 | 0.7132 | 0.8078 | +0.0946 |
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6160 | BIO1 | 0.8752 | 0.8839 | +0.0087 | BIO10 | 0.8516 | 0.8862 | +0.0346 |
The distribution of interregional niche width metrics (position range and position standard deviation) was very skewed, with many 0 values, whereas the distribution of intraregional metrics (average amplitude) showed multimodality. However, the three variants of composite niche width metrics showed a more homogeneous distribution (Suppl. material
Per definition, the five EIVE indicators for niche positions cover the full range of 0 to 10. Plotting the number of plant species in the European species pool on the five niche dimensions revealed characteristic patterns (Figure
The selected EIVE niche width measure based on both intra- and interregional variation showed remarkably similar patterns across the five niche dimensions (Figure
Niche position (A) and niche width (B) distribution of the five niche dimensions in EIVE 1.0. The figure refers to the accepted calculation variants, i.e. “mean” in the case of niche position and “nw3” in the case of niche width. Equal-area violin plots are displayed with median (horizontal line), mean (point) and standard deviation (vertical error bar). The number of taxa for each niche dimension is indicated at the top of the upper plot.
The main part of the EIVE 1.0 database is a table with (1) the accepted taxon names, (2) the taxon rank, (3) the source of the taxon concept (Euro+Med, EIVE addition, unresolved) and then for each of the five niche dimensions (M, N, R, L, T) (4) the niche position value (e.g. EIVE-M for moisture), (5) the niche width indicator (e.g. EIVE-M.nw) and (6) the number of source EIV systems on which the consensus values were based (EIVE-M.n) (Suppl. material
In addition to the online appendix of this paper, the EIVE 1.0 database is available at https://zenodo.org/record/7534792. The R code to derive EIVE from the source files and to produce the figures and statistics of this papers is available upon request from F.J. A source file to be used for the calculation of mean EIVEs in the software JUICE (
EIVE 1.0 provides assessments of ecological niche position and niche width for a total of 14,835 vascular plant taxa, including 11,148 at species rank. In terms of taxa covered, EIVE 1.0 is thus the most comprehensive ecological indicator value system published so far. In comparison, the most extensive source system of EIVE,
Major differences between the two new ecological indicator value systems for Europe.
Criterion |
|
EIVE 1.0 (this paper) |
Geographic coverage | Focus on temperate Europe plus Italy; coverage varying between indicators | Europe as a whole (in the geographic sense), extending slightly to adjacent areas |
Regional EIV systems used | 12 (only those directly compatible with the original Ellenberg scales) | 31 |
Number of accepted taxa | 8,908* | 14,835 |
Number of species | 8,679* | 11,148 |
Treatment of infraspecific taxa | No | Yes, as far as accepted in |
Indicators included | M, N, R, S, L, T | M, N, R, L, T |
Scaling of indicators | Mostly 1‒9, but M and T 1‒12 and S 0‒9 | All 0‒10 |
Values of indicators | Interval scale, but prevalence of integers | Interval scale |
Handling of indicator values that do not reflect the ecological niche but growth form or physiological niches | Maintained as in |
M values that differed only in growth form (such as 11 and 12 in |
Coding of niche width | Not available | Available for all indicator values and all species on an interval scale |
Calculation of European indicator values | Mean of included EIV systems | Mean of all available EIV systems after rescaling to the common 0-10 scale |
Use of species co-occurrence data from the European Vegetation Archive (EVA) | EVA was used to add 431 species not covered in any of the included EIV systems | Not used |
We decided to include five indicators in EIVE 1.0, namely the three soil-related indicators, moisture, nitrogen and reaction, as well as light and temperature. We selected these five because – apart from continentality and salinity – they have the highest coverage in the 31 available EIV systems addressing multiple particularly important dimensions of the ecological niches of plants at the same time. Continentality and salinity could be calculated with our approach relatively easily. However, we refrained from this step for the time being because we believe that, in their current form, these two indicators would not be compatible with the rest of the system. For continentality,
The majority of the source EIV systems had no information on niche width (e.g.
We decided to follow the nomenclature and taxonomic concepts of the Euro+Med PlantBase (
Combining the EIVs of lower-rank taxa to obtain EIVs for species or species aggregates is another issue that may warrant some more work in future versions of EIVE, and which may be greatly facilitated by expected future results of ongoing projects such as the “Atlas Florae Europaeae” (
Instead of aiming at an unachievable “perfect” taxonomic backbone, we developed decent and well-documented solution. With only 0.03% “unresolved” combinations of original taxon name × EIV systems, our rate is almost surely lower than that of pure taxonomic databases, such as
While it was beyond the scope of this paper to test the prediction accuracy of mean indicator values based on EIVE 1.0 for specific environmental variables, our exemplary validation using the temperature indicator showed a strong positive correlation between EIVE-T values and independent estimates of the temperature niche based on CHELSA bioclimate variables and GBIF occurrence records. Moreover, the correlation between our EIVE-T and bio10 or bio1 median values turned out to be better than that of any of the original EIV systems, albeit only slightly better than the system of
One explanation for the good performance of EIVE might be that each of the included EIV systems is best understood as a single expert assessment, and every expert necessarily over- or underestimates niche positions of many species equivalent to “random measurement errors”. The more such independent assessments are combined, the closer they should get to reality, which is supported in our comparison (Figure
We present a mathematically derived combination or “consensus system” of 31 individual EIV systems. One could thus argue that we are inheriting the limitations of the regional EIV systems, mainly being based on expert assessments rather than on statistical analyses of in situ measured environmental variables. While it was beyond the scope of this article to conduct comprehensive tests against measured environmental variables at the European scale, the often-demonstrated close relationship between mean regional EIVs and measured environmental variables (
Another limitation of EIVE is that, given the unequal spatial distribution of source EIV systems (Figure
Lastly, while we are expanding the characterisation of the ecological niche of species to two parameters per niche dimension, i.e. niche position and niche width, and thus go beyond the majority of existing EIV systems, one could still consider this too simplistic. While these two parameters can be statistically defined for species response curves along environmental gradients of any shape, they provide incomplete descriptions in case of skewed or bimodal distributions (
The main motivation for the creation of EIVE was the demand to have plot-based assessments of environmental conditions carry a broader set of meaningful predictors in macroecological studies of vegetation plots. Since the largest vegetation-plot databases globally, EVA (
While the usefulness of EIVE at the continental scale is evident, EIVEcan also be meaningful for local to national studies. Despite the fact that we found 31 EIV systems for this study, country-specific EIV systems are still missing for most European countries. For some EIV systems, such as Poland (
This taxonomic “backbone” is another central feature of EIVE and is provided open access to facilitate further improvements in a well-documented manner. While the EIVE backbone for vascular plants is based on
With this publication, the first version (1.0) of the Ecological Indicator Values for Europe is released. At the same time, this is the start of an open-ended, community-based endeavour that calls for continuous future updates. All raw data and derived data of EIVE are published open access with a CC BY 4.0 licence, while the R code is available upon request, meaning that everyone is free to use, modify or expand the current system as long as proper credit is given to this publication. We plan to launch a website to host all these materials, possibly within the framework of the European Vegetation Survey (http://euroveg.org/). While everybody is free to develop new systems based on EIVE 1.0, we plan to establish a committee whose responsibility will be to release future official versions of EIVE. Here, we envisage a workflow similar to the EVC Committee (http://euroveg.org/evc-committee) that releases official modifications of the EuroVegChecklist (
A first and self-evident step is to expand the current consensus system to additional taxonomic groups and additional indicators. Non-vascular taxa in the vegetation are known to often be particularly sensitive to environmental conditions and thus suitable for bioindication (
A second step would be to use the compositional data of the nearly two million vegetation plots from the European Vegetation Archive (EVA;
While for pan-European analyses, a single set of continent-wide indicator values appears to be the most practical solution, it should be acknowledged that the ecological niches of species do change across large geographic distances. Some species might change their niche position (
In this paper, we derived a European indicator value system without direct link to environmental variables – apart from the external validation of EIVE-T values with GBIF data. In the future, it would be important to conduct such validations with measured or at least independently modelled environmental variables for the other indicators as well. For the light indicator (L), the EVA database might provide suitable proxies, such as slope, aspect and inclination and tree and shrub layer cover (for a possible approach, see
In terms of geographical and taxonomic coverage, as well as number of included source systems, EIVE 1.0 is the most comprehensive system of ecological indicator values developed so far. While it was beyond the scope of this paper to test its link to measured environmental site conditions, the high correlation of our EIVE-T values with modelled temperature conditions over the species distribution ranges indicates the general validity of the approach and shows that creating a consensus system from many source systems can even increase their performance. Compared to many, if not all, previous indicator value systems in Europe or parts of Europe, EIVE comes with several methodological novelties that likely will increase the utility of the system: (i) consistent range of 0 to 10 for all niche dimensions; (ii) interval (continuous) instead of ordinal (semi-quantitative) scaling; (iii); provision of both niche position and niche width and (iv) removal of logical inconsistencies, such as the fact that many systems assigned different M values for species that grow in the same habitat but have different morphology.
With these qualities, we are convinced that EIVE 1.0 will open new analytical avenues and become an important tool for vegetation ecologists, conservation biologists, species distribution modellers and macroecologists working on the European vegetation and flora. The implementation of EIVE is facilitated by the fact that the system, its underlying data and R scripts are provided freely. EIVE is an open-source, community-based database that will be released with fixed version numbers following improvements Therefore, readers are invited to send to the lead authors information about overlooked, new or updated EIV systems of any taxonomic group of plants and any niche dimensions, as well as any suggestions for further improvements.
The Ecological Indicator Values for Europe (EIVE) 1.0 and the data underlying their derivation are freely available in the Supporting material and in a permanent repository at https://www.doi.org/10.5281/zenodo.7534792.
The idea of the database and paper was conceived by J.D., the database was prepared by E.H., F.J., K.V.M. and J.D., while F.J. and F.G. set up the analytical procedures in R. F.J. implemented the automated taxonomic assignment, which was refined by J.D., O.C., T.T., G.K., R.G. and T.R. M.N. ran the comparisons with GBIF and CHELSA data. J.D. led the writing, with major contributions from K.V.M., K.M., M.N., F.G., R.G., T.T, H.H.B. and M.J.S. The map was prepared by K.V.M. and the conceptual figures by F.G. Harmonised data from several regional EIV systems were contributed by I.A., M.C., L.T., G.K. and J.D., while all remaining co-authors contributed their national EIV system in digital format, partly with unpublished updates, and helped with their interpretation. All authors checked, improved and approved the manuscript.
We thank the Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, for a grant (“Anschubfinanzierung”) that supported the initial steps of this project. We thank Hartmut Dierschke (†), Nikolai Ermakov, Anna Maria Fosaa (†), Stephan M. Hennekens, Mark O. Hill and Niels Böhling for providing their regional EIV systems with relevant background information and the Euro+Med Secretariat Berlin for providing the Euro+Med database enabling us to use it as the basis for the taxonomic backbone of EIVE. Hallie Seiler provided thorough linguistic editing. We thank Wolfgang Willner as Subject Editor and three anonymous reviewers for a fast and careful review that allowed us to further improve the manuscript.
Detailed overview of the 31 ecological indicator value systems (EIVs) used to derive the Ecological Indicator Values for Europe (EIVE) 1.0 (*.pdf).
The analysed 31 EIV systems with original and harmonised plant nomenclature and original and rescaled indicator values for M, N, R, L and T (*.xlsx).
Documentation of additions to and modifications of the taxonomic backbone from
Methodological details of the calculations of the three variants of niche position (median, mean, weighted mean) and the three variants of niche width (nw1, nw2, nw3) (*.pdf).
Documentation of the stepwise approach to derive the European consensus system of niche positions EIVEres (EIVE 1.0) from the individual EIV source systems after initial rescaling (EIVini) (*.pdf).
Bioclimate statistics of the species used for EIVE evaluation, and the corresponding DOIs of the GBIF occurrence downloads (*.xlsx).
Comparison of different metrics of niche width regarding the resulting value distributions and the correlations with GBIF derived bioclimatic variables. (*.pdf).
EIVE 1.0 indicator values for niche position and niche width of M, N, R, L and T (*.xlsx).